PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10018528m

Common Name

CARUB_v10018528mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 103aa MW: 11781 Da PI: 9.0528

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10018528m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.8	8.3e-29	3	92	11	100
DUF260 11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C ++Cv+apy+p ++p+k+a + k+F +sn+ k++ +++++++++ ++s ++eAe r+rdPv G+vgvi+kl++ql+ lk +l+ +k+e Carubv10018528m 3 TCIEECVFAPYLPGNKPEKYATLSKVFNMSNIAKIVMSIEPSQKQACVDSFCFEAETRIRDPVMGCVGVIRKLERQLQDLKLKLKIAKKE 92 7***********************************************************************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.551	1	93	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-28	3	90	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MHTCIEECVF APYLPGNKPE KYATLSKVFN MSNIAKIVMS IEPSQKQACV DSFCFEAETR 60 IRDPVMGCVG VIRKLERQLQ DLKLKLKIAK KELAALQEIH RRN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	4	93	22	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	4	93	22	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10018528m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019101899.1	8e-32	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	R0HJ33	2e-70	R0HJ33_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006292317.1	4e-71	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	3e-24	LBD family protein

Link Out ? help Back to Top
Phytozome	Carubv10018528m
Entrez Gene	17885420