PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018545m
Common NameCARUB_v10018545mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 225aa    MW: 25783.5 Da    PI: 6.9409
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018545mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC96.22.7e-3058151296
            NF-YC   2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                      l++fw++q  ++   k+ +lPla +k+++k d++vkm+s + Pvll+ka e+fi e+tlr+w ++++ +r+t++ +di+aa+ +++i++ lv+ 
  Carubv10018545m  58 LEMFWAHQNSSEL-HKKPDLPLATVKRVMKCDPNVKMVSWKGPVLLAKASEMFIQEVTLRAWRQTQSRSRTTIRSCDIHAALRSSVIYNELVNL 150
                      889***9976665.57899**********************************************************************99986 PP

            NF-YC  96 v 96 
                       
  Carubv10018545m 151 L 151
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-2170138IPR009072Histone-fold
SuperFamilySSF471131.68E-1871141IPR009072Histone-fold
PfamPF008082.1E-1476138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKPVIVTSS LIPNPSMQET CSMNEHREPS TRSLTQSSDQ RRPFYPAHRE RDLLNQDLEM  60
FWAHQNSSEL HKKPDLPLAT VKRVMKCDPN VKMVSWKGPV LLAKASEMFI QEVTLRAWRQ  120
TQSRSRTTIR SCDIHAALRS SVIYNELVNL LSVEQCFANH PPQGTTHQQM LPPENVNEPN  180
MKVPIDIDQI QQQSLFNLKA DHFIEIGEFE LDPMIQVVLC SQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-185815119117HapE
4g92_C4e-185815119117HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018545m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638912.11e-146nuclear transcription factor Y subunit C-10
TrEMBLR0FRK51e-165R0FRK5_9BRAS; Uncharacterized protein
STRINGXP_006292334.11e-166(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1910667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.12e-25nuclear factor Y, subunit C12