PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018614m
Common NameCARUB_v10018614mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 361aa    MW: 40885.5 Da    PI: 8.3425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018614mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13176226154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r +h ++Er+RR+++N+ ++ Lr llP+    + ++ + a+i+  A++Y+k L
  Carubv10018614m 176 QRINHIAVERNRRRQMNEHISSLRALLPPT---YIQRGDQASIVGGAINYVKVL 226
                      699**************************9...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-11174231No hitNo description
PROSITE profilePS5088815.453175226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-17175242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-11176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13177240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10181232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MERFQGHINP CFLDRKADVR SLEVPAFAEA QSFAIKEEEA SLLQDTVPFL QMLQSEDPSS  60
FFTIKEPSFL TLLSLQTVKE TWELERYPEF HSPVQSETNR FPISASSMGG TNQAFSSQEL  120
PFSQANMTLP PTSSPLTTNS RRKRKLNHLL APELTREKRK RRKTKPSKNI EEIENQRINH  180
IAVERNRRRQ MNEHISSLRA LLPPTYIQRG DQASIVGGAI NYVKVLEQII QSLESQKRTQ  240
QRSEVVGNAK DHLSGISSNE LWTTREDQTC IPKIEATVIQ NHVSLKVKCL KKQGQLLKGI  300
ISLEKLRLTV LHLNIAPLSH SSVSYSFNLK MEDDCDLESA DEITAAVHQI FDIPTISLNT  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142162KRKLNHLLAPELTREKRKRRK
2157162KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018614m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185270.0AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292401.10.0transcription factor bHLH67 isoform X2
SwissprotQ700E40.0BH067_ARATH; Transcription factor bHLH67
TrEMBLR0H7K90.0R0H7K9_9BRAS; Uncharacterized protein
STRINGXP_006292401.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]