PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018752m
Common NameCARUB_v10018752mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YB
Protein Properties Length: 174aa    MW: 18880 Da    PI: 5.9914
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018752mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1771.8e-5526120195
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimk+ lP n+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa+atlGfe+y+eplkvyl++yre +
  Carubv10018752m  26 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKVYLMRYREGD 119
                      69*****************************************************************************************966 PP

            NF-YB  95 g 95 
                      +
  Carubv10018752m 120 T 120
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-5224136IPR009072Histone-fold
SuperFamilySSF471131.3E-3929148IPR009072Histone-fold
PfamPF008082.5E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.8E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.8E-217997No hitNo description
PRINTSPR006152.8E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAESQTGGGG GSHESGGDQS PRSLNVREQD RFLPIANISR IMKRGLPLNG KIAKDAKETM  60
QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG FEEYIEPLKV YLMRYREGDT  120
KGSGKGGESS GKRDGQPSQV SQFSQLPQQG SFSQGPYGNS QASNMMVQMP GTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4726117192Transcription factor HapC (Eurofung)
4g92_B6e-4726117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018752m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1768270.0AK176827.1 Arabidopsis thaliana mRNA for transcription factor NF-Y, CCAAT-binding - like protein, complete cds, clone: RAFL25-38-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504090.11e-109PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ67XJ21e-110NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLR0H7X61e-124R0H7X6_9BRAS; Uncharacterized protein
STRINGXP_006292521.11e-125(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-95nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]