PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10018856m

Common Name

CARUB_v10018856mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 192aa MW: 21870.5 Da PI: 7.2926

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10018856m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5e-16	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ +++d+ k++G+g+Wk Iar+ k R++ q+ s+ qky Carubv10018856m 97 PWSAEEHSRFLDGLKKYGKGDWKNIARECVKSRSPTQVASHAQKY 141 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.2	3	57	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.814	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	3.45E-16	93	146	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-11	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-11	94	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-15	95	145	IPR006447	Myb domain, plants
CDD	cd00167	5.21E-11	97	142	No hit	No description
Pfam	PF00249	6.5E-12	97	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MASIPVWSRH DDKRFELALK HFSQGSQDSQ ELLKKIALHI EKPYEEVKEY YLALVYDVGL 60 IESGRIAIPK YDEDYYVPLK EATESKSQVI EKAKGTPWSA EEHSRFLDGL KKYGKGDWKN 120 IARECVKSRS PTQVASHAQK YFLRQSSDSK KGKRSSIHDM TLGHTDNVTD PTGSNMSSMD 180 QQPHSVDQPP LD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10018856m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292614.2	1e-142	transcription factor SRM1
TrEMBL	R0FS09	1e-140	R0FS09_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006292614.1	1e-141	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14731	7	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10580.2	1e-78	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Carubv10018856m
Entrez Gene	17885574