PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018886m
Common NameCARUB_v10018886mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 190aa    MW: 21410.3 Da    PI: 6.8708
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018886mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.51.7e-36111101100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC+kdCv+apyfp +++++++++hk+FGas+v +l++++++++re+ams+l++eA++r++d v+G+ ++i +lq+ql+ l+++l
  Carubv10018886m  11 PCAACKYLRRKCTKDCVFAPYFPTNKQENYEMIHKVFGASHVASLINEIHPSQREIAMSTLTWEAQVRLNDLVHGVSSIIDRLQSQLNDLQNQL 104
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a +k+e
  Carubv10018886m 105 AIAKNE 110
                      **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.65110111IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3511108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
ILYIMDNIVP PCAACKYLRR KCTKDCVFAP YFPTNKQENY EMIHKVFGAS HVASLINEIH  60
PSQREIAMST LTWEAQVRLN DLVHGVSSII DRLQSQLNDL QNQLAIAKNE LASGGFVPTF  120
APQHPIAYQQ LQSNPMIPDT PINDGYLTAQ QLQNEAQRFA STQTAQMQQT QETHTQHNES  180
VMTVRDKKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-341112211127LOB family transfactor Ramosa2.1
5ly0_B9e-341112211127LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018886m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292643.21e-138LOB domain-containing protein 28
SwissprotQ9SCS42e-74LBD28_ARATH; LOB domain-containing protein 28
TrEMBLR0FSZ01e-140R0FSZ0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006292643.11e-141(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.15e-62LOB domain-containing protein 28