PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019084m
Common NameCARUB_v10019084mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 157aa    MW: 18060.8 Da    PI: 7.9606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019084mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM416.1e-131213610128
              NAM  10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      tde+++  yL++kv+g+ +   ++ ++++  ++y+ ePw Lp+        + +ew+   kr++ky+   +++ +  +g W      +++ls+ 
  Carubv10019084m  12 TDEDIIEGYLRPKVNGEATANPRFiVDNMgeELYTREPWLLPQptD--PilNPREWFCLGKRNSKYR---QAEGVDCEGAWILIQGRTPILSEe 100
                      9****************966655535555558*********96332..233778*****99999996...34556679****988889999875 PP

              NAM  96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                      +ge++g    + +    k+++     ++W+m +y l
  Carubv10019084m 101 SGEVIGATMRFRYCfrkKNDKAAMAFSNWFMRQYCL 136
                      677777777777666544455556689*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.4873155IPR003441NAC domain
PfamPF023651.1E-78135IPR003441NAC domain
SuperFamilySSF1019412.22E-2111153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVGQGEVRCR ITDEDIIEGY LRPKVNGEAT ANPRFIVDNM GEELYTREPW LLPQPTDPIL  60
NPREWFCLGK RNSKYRQAEG VDCEGAWILI QGRTPILSEE SGEVIGATMR FRYCFRKKND  120
KAAMAFSNWF MRQYCLCDKS KPYNTPHVLC KITCNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019084m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290412.11e-115NAC domain-containing protein 96
TrEMBLR0HE411e-114R0HE41_9BRAS; Uncharacterized protein
STRINGXP_006290412.11e-114(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.13e-59NAC domain containing protein 27