PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10019214m

Common Name

CARUB_v10019214mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 110aa MW: 12647.4 Da PI: 10.379

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10019214m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	82.9	7.8e-26	36	94	13	71
TCP 13 TkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 T+ R RR+Rl+++caa++F+L++eLGf++d++t+ WLl++a+pai +++g + ++ s Carubv10019214m 36 TSSKERHRRIRLPVTCAAQVFQLTKELGFKTDGQTVGWLLRNAEPAILAAMGHGLDTTS 94 89999***********************************************9444442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.548	29	85	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-21	29	94	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MYHTCSLPLT LTKERTRPKE MDLRNNTERK ARRTPTSSKE RHRRIRLPVT CAAQVFQLTK 60 ELGFKTDGQT VGWLLRNAEP AILAAMGHGL DTTSDETSNH FIHSYMNIHN

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10019214m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292943.2	4e-77	transcription factor TCP16
Swissprot	Q9M1U4	8e-27	TCP16_ARATH; Transcription factor TCP16
TrEMBL	R0FTM7	3e-77	R0FTM7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006292943.1	5e-78	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16163	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	3e-29	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Carubv10019214m
Entrez Gene	17885870

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]