PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019223m
Common NameCARUB_v10019223mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 323aa    MW: 36657.3 Da    PI: 5.6745
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019223mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51111391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPt+eel+++yL+kk+++ k++l +vi++vd++k+ePwd+++k+k     +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk 
  Carubv10019223m  11 VPPGFRFHPTEEELLQYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKI 103
                      69****************************.9***************964444222455*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++s +g  +g++ktLvfykgrap+g+k+dW+mheyrl
  Carubv10019223m 104 IYS-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                      ***.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-568176IPR003441NAC domain
PROSITE profilePS5100555.22811176IPR003441NAC domain
PfamPF023651.1E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEKC  60
KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGDR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DGSVLISSNH DDDVTVETCE AIGGDEGWVV CRVFKKKNLC  180
KTTINSPARP VKTSPFNEET IEQLLEVMEQ SCKEEIGLDP FLKLPNLENN CYVSKVMDPS  240
FVTSWAALDR LVASQLNGPN SYLIPPVCES PESPFHELNR SGYYTGLTPD NYIPDMDLWN  300
DADFGRTTTS SSNPSCHVLN LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-48817817170NAC domain-containing protein 19
3swm_B2e-48817817170NAC domain-containing protein 19
3swm_C2e-48817817170NAC domain-containing protein 19
3swm_D2e-48817817170NAC domain-containing protein 19
3swp_A2e-48817817170NAC domain-containing protein 19
3swp_B2e-48817817170NAC domain-containing protein 19
3swp_C2e-48817817170NAC domain-containing protein 19
3swp_D2e-48817817170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00015PBMTransfer from AT3G61910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019223m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0843230.0AY084323.1 Arabidopsis thaliana clone 103969 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292948.10.0NAC domain-containing protein 66
SwissprotQ9M2740.0NAC66_ARATH; NAC domain-containing protein 66
TrEMBLR0FTN10.0R0FTN1_9BRAS; Uncharacterized protein
STRINGXP_006292948.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.10.0NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]