PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019341m
Common NameCARUB_v10019341mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 251aa    MW: 28201.6 Da    PI: 8.1428
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019341mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof107.37.9e-342178461
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      ++ cprC+s+ntkfCy+nny  sqPry Ck+Crr+Wt+GGalrnvP+Ggg+rk kk+
  Carubv10019341m 21 PHRVCPRCHSDNTKFCYFNNYRKSQPRYNCKNCRRHWTHGGALRNVPIGGGSRKIKKA 78
                     5678**************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-212077IPR003851Zinc finger, Dof-type
PfamPF027013.8E-302377IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.9342377IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDNLLLFAEE DTNPRNGEKP PHRVCPRCHS DNTKFCYFNN YRKSQPRYNC KNCRRHWTHG  60
GALRNVPIGG GSRKIKKARV EQPPASRGMI PLDIHQFNPQ PFPYLQGNND FVGSFGAAAP  120
VRNHFGPFPD LHGGMLANVP PFQSFLPNYL IDYQDVSFEQ DFYDVGSVNP MINQSIGGGF  180
VDNPDGYLIS QVDQYEWSQL SFNNTAIMDP GASTSGSRGP EDMTVTSDNI KRLKYNRVIK  240
HTCHLEKHGP *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019341m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293054.10.0dof zinc finger protein DOF4.5
SwissprotO495502e-68DOF45_ARATH; Dof zinc finger protein DOF4.5
TrEMBLR0FSX20.0R0FSX2_9BRAS; Uncharacterized protein
STRINGXP_006293054.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.16e-71Dof-type zinc finger domain-containing protein