PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020636m
Common NameCARUB_v10020636mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 330aa    MW: 36492.5 Da    PI: 9.7143
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020636mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-113990147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l+ +++++G+g Wk I r         +R+  ++k++w+++
  Carubv10020636m 39 KLKWTGEEEEALLAGIAKHGPGKWKNILRDPEfadqlIHRSNIDLKDKWRNL 90
                     689*********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8063495IPR017930Myb domain
SuperFamilySSF466892.87E-153794IPR009057Homeodomain-like
SMARTSM007176.8E-83893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-133891IPR009057Homeodomain-like
PfamPF002494.1E-73990IPR001005SANT/Myb domain
CDDcd116607.21E-204190No hitNo description
SuperFamilySSF467851.9E-13156245IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.9E-16157222IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.5E-9158233IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.108159233IPR005818Linker histone H1/H5, domain H15
PfamPF005389.2E-8161230IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
ARTNETSGDK SASDSDRAYA SRRREHKVKL HKAVMGNQKL KWTGEEEEAL LAGIAKHGPG  60
KWKNILRDPE FADQLIHRSN IDLKDKWRNL SVPPGNQGSN YKARPIKVKE EGVTPPPVTI  120
VDNINPPPIV KPIIPPVPSI QRNDLINDES FNIVVDTKNA PRYDGMIFEA LSSLADANGS  180
DVSSIFHFIE PRHEVPPNFR RILSSRLRRL AAQSKLVKVS TFKSLQNFYK IPDPSGTRTP  240
APKPKETHVK PRQSNNQASA ISQQMIDEAS ITAACKVVEA ENKIDIARVA GEEFAKITKL  300
AEGSEHLLVI ANEMHEQCSR GETVVLACV*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020636m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3729252e-75AF372925.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302536.20.0telomere repeat-binding factor 5 isoform X1
SwissprotF4IEY41e-148TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLR0HZW40.0R0HZW4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006302536.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.11e-125MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]