PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020655m
Common NameCARUB_v10020655mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 324aa    MW: 36572.1 Da    PI: 7.8518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020655mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.11.8e-15249273226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ +++tG C+yGd+C+FaHg
  Carubv10020655m 249 KTELCNKWQETGACPYGDNCQFAHG 273
                      9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-19242280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-11245279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539247275IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-9247274IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-12249273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8281316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-12281314IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972285313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKKLTESTV TDLEYVTALN LNSPPPPLSP ISERSVNSKH QEEFAASFAS LYNSIFSPDS  60
QLPISLSLSP SPPSSSSPPA RVDTTTEHRL RQARLILEYD ELNEHYELCL KRLQSLMTEL  120
DSLRHENDSL RFENSDLLKL IHLSTSSPSS SSVSPPPIHN RQFRHQISDF GPIQKHSRSA  180
KRNSLPKSIS VRSPDYLKVN HGRSHGFGVS DRQTSQLSNT DSVSSQKLCV STKEREALEV  240
DVYRQGMTKT ELCNKWQETG ACPYGDNCQF AHGIDELRPV IRHPRYKTEV CRMIVTGAAC  300
PYGHRCHFRH SLTDQERMMM LTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21249311567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020655m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-100AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-100CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302553.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N31e-145C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLR0GI870.0R0GI87_9BRAS; Uncharacterized protein
STRINGXP_006302553.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-139C3H family protein