PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020688m
Common NameCARUB_v10020688mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 312aa    MW: 35296.8 Da    PI: 7.843
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020688mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.7e-1249105155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa+a++ a++k++g
  Carubv10020688m  49 SSFRGVTRHRWTGRYEAHLWDkNSWNDtQTKKGRQGAYDEEEAAARAYDLAALKYWG 105
                      679******************88888888888888********************98 PP
2AP252.51.2e-16148199155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Carubv10020688m 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 199
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1449114IPR016177DNA-binding domain
PfamPF008479.6E-950105IPR001471AP2/ERF domain
PROSITE profilePS5103218.75550113IPR001471AP2/ERF domain
SMARTSM003803.6E-2050119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1250113IPR001471AP2/ERF domain
PRINTSPR003672.3E-55162IPR001471AP2/ERF domain
CDDcd000181.67E-13148209No hitNo description
PfamPF008471.1E-11148199IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18148209IPR016177DNA-binding domain
PROSITE profilePS5103218.044149207IPR001471AP2/ERF domain
SMARTSM003804.5E-25149213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-17149208IPR001471AP2/ERF domain
PRINTSPR003672.3E-5189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAKVSRRSKK TMEEIGDKTA SESETASIAF KSKRKRKSPP QNTPPQRSSS FRGVTRHRWT  60
GRYEAHLWDK NSWNDTQTKK GRQGAYDEEE AAARAYDLAA LKYWGRDTLL NFPLPTYEDD  120
IKEMEGHSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAAIAY DIAAIEYRGL HAVTNFDVSR YLNPSAAANH HIPDKPDSDS DSKPIRKPDH  240
EPDNGSPTSE EISEPSTPPE AIPPRRSFPD DIQTYFGCQD SGKPATEEDV IFGGFNPFMN  300
PSFYNEFDYG P*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020688m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1173000.0AK117300.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL16-86-I04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302580.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X2
SwissprotA0JPZ81e-154AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLR0IFF00.0R0IFF0_9BRAS; Uncharacterized protein
STRINGXP_006302580.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-135AP2 family protein