PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020705m
Common NameCARUB_v10020705mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 307aa    MW: 33728.5 Da    PI: 8.4209
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020705mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.3e-3274128358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                       vrY+eClkNhAas+Gg + DGCgEfmps geegt++al+CaAC+CHRnFHR+e +
  Carubv10020705m  74 PVRYRECLKNHAASVGGSVHDGCGEFMPS-GEEGTIEALRCAACDCHRNFHRKEID 128
                      689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-2769128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.4E-3075127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-3076127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.27677126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-31230299IPR009057Homeodomain-like
SuperFamilySSF466898.33E-20232299IPR009057Homeodomain-like
PROSITE profilePS500718.568236300IPR001356Homeobox domain
TIGRFAMsTIGR015651.3E-29238295IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDMRSHEMIE RRRDDNGNNG GVISNIITTN NDDNCNGNNN NNNNTRVSCN SQTLDHHQTK  60
SPSSFSISAA VQSPVRYREC LKNHAASVGG SVHDGCGEFM PSGEEGTIEA LRCAACDCHR  120
NFHRKEIDGV GSSDLIAHHR HHHHHHNQYG GGRRPPPNMM LNPLMLPPPP NYQPIHHHKY  180
GMSPTGGGGM VTPMSVAYGG GGGGAESSSE DLNMYGQSSG EGAGAAAGQM AFSMSSSKKR  240
FRTKFTTEQK ERMMEFAEKL GWRMNKQDEE ELKRFCGEIG VKRQVFKVWM HNNKNNAKKP  300
PTPTTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-232372971676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020705m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4039980.0JN403998.1 Capsella rubella isolate Cr1GR1_TS1 AT1G75240-like protein gene, partial cds.
GenBankJN4040030.0JN404003.1 Capsella rubella isolate CrTAAL_1_TS2 AT1G75240-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302600.10.0zinc-finger homeodomain protein 5
SwissprotQ9FRL51e-144ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLR0IFI10.0R0IFI1_9BRAS; Uncharacterized protein
STRINGXP_006302600.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-113homeobox protein 33