PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020960m
Common NameCARUB_v10020960mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 206aa    MW: 22449.8 Da    PI: 5.3469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020960mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-194190255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++ a++kl+g
  Carubv10020960m 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAARKLYG 90
                     69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-3040100No hitNo description
SuperFamilySSF541711.9E-2141100IPR016177DNA-binding domain
PROSITE profilePS5103221.9834198IPR001471AP2/ERF domain
PfamPF008474.5E-144190IPR001471AP2/ERF domain
SMARTSM003802.0E-3441104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-304199IPR001471AP2/ERF domain
PRINTSPR003677.1E-104253IPR001471AP2/ERF domain
PRINTSPR003677.1E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES LRSYPETASS QASQTAPSSN  120
TGGKSSDSES PCSSNEMSLC GRVAEEISWE HINVDLPVMD DSSIWEEATI SLGFPWVNEG  180
DNDISRFDTC ISGGYSNWDS FHSPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-184298360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020960m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064340.0AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBankAC0237540.0AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAK1191320.0AK119132.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-48-H08.
GenBankAK1759020.0AK175902.1 Arabidopsis thaliana mRNA for transcription factor DREB2A like protein, complete cds, clone: RAFL22-54-M24.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302829.11e-152dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ21e-137DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLR0GIK81e-150R0GIK8_9BRAS; Uncharacterized protein
STRINGXP_006302829.11e-151(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-127ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]