PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020991m
Common NameCARUB_v10020983mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 190aa    MW: 21306.2 Da    PI: 10.1914
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020991mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-163781248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++++++Ed+ll++++++lG++ W++Ia +++ gRt+++++ +w +yl
  Carubv10020991m 37 NKFSKDEDDLLLKLHALLGNR-WSLIAGRLP-GRTDNEVRIHWETYL 81
                     689******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-181890IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-222886IPR009057Homeodomain-like
PROSITE profilePS5129424.0493185IPR017930Myb domain
SMARTSM007171.0E-153583IPR001005SANT/Myb domain
PfamPF002492.4E-153781IPR001005SANT/Myb domain
CDDcd001673.89E-65681No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNKIRHRALS PSSGVQHRVK RCRLRDRNYV RPEVKENKFS KDEDDLLLKL HALLGNRWSL  60
IAGRLPGRTD NEVRIHWETY LKRKLIKMGI DPTNHRLHHH ASYISRRCPN PSHKELETKI  120
ISDQSSSVSE SCGITFLPIS STNCSEGSTS TGKTLLPDLN IGLIPTATSL PLPWLQDSND  180
SSNHGSTGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-16208543108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020991m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3706091e-166AF370609.1 Arabidopsis thaliana putative transcription factor (F23N20.2) mRNA, complete cds.
GenBankAY0482311e-166AY048231.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY0870931e-166AY087093.1 Arabidopsis thaliana clone 31592 mRNA, complete sequence.
GenBankAY0916971e-166AY091697.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY5195191e-166AY519519.1 Arabidopsis thaliana MYB transcription factor (At1g71030) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302853.11e-136myb-related protein 330
TrEMBLR0IC451e-135R0IC45_9BRAS; Uncharacterized protein
STRINGXP_006302853.11e-136(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.15e-92MYB-like 2