PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10021131m

Common Name

CARUB_v10021131mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HSF

Protein Properties

Length: 135aa MW: 15592.1 Da PI: 10.9938

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10021131m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	52.5	1.3e-16	12	100	2	97
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F +++y+i++d++l++++sws ++n f++++ ef +k+Lp+ + nf+ F+ L gF++vk + k +F+h++F +++ ell Carubv10021131m 12 FYTRVYQIVDDPSLDSIVSWSGSNNGFIIWNVGEFCRKILPTSLEFGiNFSKFYSRLSSHGFNRVKGPGK--------LQFQHEYFVRDRPELL 97 999****************999**************9886559**************996........6**********999 PP XXX CS HSF_DNA-bind 95 eki 97 + + Carubv10021131m 98 RMM 100 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.5E-21	7	97	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.26E-21	8	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-23	8	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-5	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.6E-16	12	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-5	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MVHNFQRGLP SFYTRVYQIV DDPSLDSIVS WSGSNNGFII WNVGEFCRKI LPTSLEFGIN 60 FSKFYSRLSS HGFNRVKGPG KLQFQHEYFV RDRPELLRMM MAQVLTAKRN AKKAKAKARR 120 DRVQVEGLLK HLQI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10021131m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428835.1	2e-50	PREDICTED: heat stress transcription factor A-4a-like
TrEMBL	R0GJE4	1e-95	R0GJE4_9BRAS; Uncharacterized protein
STRING	XP_006302983.1	2e-96	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	2e-37	Winged helix-turn-helix transcription repressor DNA-binding

Link Out ? help Back to Top
Phytozome	Carubv10021131m
Entrez Gene	17896128