PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021157m
Common NameCARUB_v10021157mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 122aa    MW: 13955.9 Da    PI: 10.0099
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021157mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-073377244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT    + + +a + + ++   +W+ +a+ +  g++ +++k+++
  Carubv10021157m 33 SSWTFHQNKMFERALAIYDKDtpdRWHNVAKAVE-GKSVEEVKHHY 77
                     57********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-63183IPR001005SANT/Myb domain
SuperFamilySSF466892.85E-123389IPR009057Homeodomain-like
CDDcd001671.98E-44177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
QLSSLTLSLF FLSFSFPSQV RKQMASNSTS STSSWTFHQN KMFERALAIY DKDTPDRWHN  60
VAKAVEGKSV EEVKHHYDIL VEDLINIESG RVPLPKYKTM ESKPRGTSDF DTRVMKKNLK  120
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-302499175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021157m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303004.28e-69protein RADIALIS-like 6
SwissprotQ1A1736e-53RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLR0GJ421e-84R0GJ42_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006303004.12e-85(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-48RAD-like 6