PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021420m
Common NameCARUB_v10021420mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 231aa    MW: 26198.3 Da    PI: 6.0793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021420mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.42.9e-2393153259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++k s + rsYYrC++a   +C+++k+v+  ++ p v+ + Y g+H+++
  Carubv10021420m  93 DDGFAWRKYGQKTIKTSVHQRSYYRCAYAkdrNCNATKRVQMIKDSPPVFRTSYMGQHTCK 153
                      8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2386153IPR003657WRKY domain
PROSITE profilePS5081118.45287155IPR003657WRKY domain
SuperFamilySSF1182903.79E-2390153IPR003657WRKY domain
SMARTSM007741.3E-3292154IPR003657WRKY domain
PfamPF031061.6E-2393153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFSNIDHKAL AALLHGQGCA NNLKTLLDNR EISSVLIEPL INTILDSFSL ALSFVDSPTP  60
PQLLESSSCQ NMAALVHQRS SKKDHESPNP RPDDGFAWRK YGQKTIKTSV HQRSYYRCAY  120
AKDRNCNATK RVQMIKDSPP VFRTSYMGQH TCKAFEVYDE TYGSEMIQFD QVKSELVMPT  180
STDHQAITID DKARDHTMNQ GCDINDFLVD YDQFWQNEFP SFSYGDTVFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1693153969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021420m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644077.11e-171probable WRKY transcription factor 63
SwissprotQ9C5571e-106WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLR0GDS11e-174R0GDS1_9BRAS; Uncharacterized protein
STRINGXP_006301029.11e-175(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-108WRKY DNA-binding protein 64