PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10021715m

Common Name

CARUB_v10021715mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 200aa MW: 22161.5 Da PI: 4.6329

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10021715m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.8	4.2e-11	12	49	2	38
---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 i+nk ++v f+kRrng+ KA+EL+ L d ++a++ Carubv10021715m 12 EIQNKNAKTVAFTKRRNGLYRKASELCLLSpDSQIAIL 49 699**************************757777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	1.39E-18	3	83	No hit	No description
SMART	SM00432	1.5E-6	3	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.049	3	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-13	5	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.5E-11	13	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-8	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MGGKKHKINI SEIQNKNAKT VAFTKRRNGL YRKASELCLL SPDSQIAILA TPVSSNSHAS 60 FYSFGHSSVD QVVSSLLYDQ PPVLPANQEK RSGLGFWWED KGFDMSENVD ELKEAVDAVS 120 RMLNSARARL DGVVKSNQRD GRLVIHQEDE EEILQLRSEE TTTNQGDTSG SASNHLVSED 180 DTLYLDDDLF SDFNIDPLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10021715m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301308.1	1e-146	agamous-like MADS-box protein AGL97
Swissprot	Q9C633	4e-43	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0GEX7	1e-145	R0GEX7_9BRAS; Uncharacterized protein
STRING	XP_006301308.1	1e-146	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	1e-87	AGAMOUS-like 55

Link Out ? help Back to Top
Phytozome	Carubv10021715m
Entrez Gene	17895207

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]