PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021738m
Common NameCARUB_v10021738mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22305 Da    PI: 4.9587
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021738mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.41.6e-121149138
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                     +rie ks ++v f+kR+ng++ KA EL+ L  ++++a++
  Carubv10021738m 11 ERIEKKSVKSVAFTKRKNGLFRKATELCLLSpATQIAIL 49
                     69****************************834566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.549351IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-8363IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-14478IPR002100Transcription factor, MADS-box
CDDcd002666.72E-21484No hitNo description
PRINTSPR004041.9E-8525IPR002100Transcription factor, MADS-box
PfamPF003191.2E-91243IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGGTKRKIKI ERIEKKSVKS VAFTKRKNGL FRKATELCLL SPATQIAILA TPLTANSHAS  60
FYSLGHPSVD QVVSSLLNDQ PPPPVNQENY NSSGLEFWWE DKGFDISENV EELKEAVDAA  120
SRMLNNARVR LDDALKNNQR DGSLVMHQED EVLQLGNEYT NQIPKFQGET SASASLLKYE  180
EDNLHLDDFF TDFKIDPF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021738m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301329.11e-147agamous-like MADS-box protein AGL97
SwissprotQ9C6331e-37AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0GEI91e-145R0GEI9_9BRAS; Uncharacterized protein
STRINGXP_006301329.11e-146(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.19e-90AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]