PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021744m
Common NameCARUB_v10021744mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 185aa    MW: 21042.1 Da    PI: 8.3195
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021744mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.5e-39121111100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++r+kC+kdCvlapyfp+++pk+f n hklFG+sn++k++k+++e++r++am+ l+++A+ara dPv G+++++ +l++++e+ +ael
  Carubv10021744m  12 ACAACKYQRKKCTKDCVLAPYFPQDRPKQFLNSHKLFGVSNITKMIKKVDESQRDIAMQNLIFHANARALDPVGGVYRIVCDLKRKIECCQAEL 105
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      + + ++
  Carubv10021744m 106 NFTLQQ 111
                      998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.06711112IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-3612107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSLSSLSGGS TACAACKYQR KKCTKDCVLA PYFPQDRPKQ FLNSHKLFGV SNITKMIKKV  60
DESQRDIAMQ NLIFHANARA LDPVGGVYRI VCDLKRKIEC CQAELNFTLQ QIAMFRSLAQ  120
QEQRQRQDLP FGCHSYGGLL EQGDECINVD GYDYLQNMQQ EERRISDQEQ KHLLRQILMS  180
PSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2521061105LOB family transfactor Ramosa2.1
5ly0_B1e-2521061105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021744m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301334.11e-136LOB domain-containing protein 7
SwissprotQ9SSM93e-80LBD7_ARATH; LOB domain-containing protein 7
TrEMBLR0GEJ31e-134R0GEJ3_9BRAS; Uncharacterized protein
STRINGCagra.1013s0013.1.p1e-135(Capsella grandiflora)
STRINGXP_006301334.11e-135(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.11e-82LOB domain-containing protein 7