PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021788m
Common NameCARUB_v10021788mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 628aa    MW: 71532.5 Da    PI: 6.6931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021788mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-5561341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v
  Carubv10021788m   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98 
                      79****************************.99***************6434555777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  Carubv10021788m  99 NS-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                      *9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-644156IPR003441NAC domain
PROSITE profilePS5100560.8996156IPR003441NAC domain
PfamPF023653.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECES KSGIQDAYAL CRVFKKSGLA NKIEEQQQNH VMKNKGTTNS  180
EQSTSSTCLY SDGMYENIEN SEYPISPDTG GGLTQLGNIS SSSDMETMEN KWSQFMSHDT  240
SFNFPAQSQY GTISYPPTKV EIELECARLQ NRMLPTVPPL YVEDQTHGEY LGNNVANDTD  300
EMLSKIIALA QSSHEPRNSL DSWDGGSASG NFNGDFNYSR ENIACVQANM KAIDMQEHYG  360
RFKEERLVEN LRWVGVSSKE LEKSFIEEHS TVVPIEDIWS YHRDTQEHQN QDLMDVNNNN  420
GDVDDAFTLE FSENEHNENL LDKNDHDTTS SPRFDVVKKV EVSHGLFVTT RQVTNTFFQQ  480
IVPSQNVIVY INPTGVINEC CHNMTSKEEV HVGKKIVKPR TNGVVSTILG PWRKLAYVFG  540
FIPMLLLCVH QRGNSIKNQS SECYSRRSKK GDCNNPGTVL MMENAVVRRK NWKMKKEQGL  600
RVQDCFLLKR LGLSLAIILA VSTITLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-56116212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-56116212171NO APICAL MERISTEM PROTEIN
3swm_A1e-56116215174NAC domain-containing protein 19
3swm_B1e-56116215174NAC domain-containing protein 19
3swm_C1e-56116215174NAC domain-containing protein 19
3swm_D1e-56116215174NAC domain-containing protein 19
3swp_A1e-56116215174NAC domain-containing protein 19
3swp_B1e-56116215174NAC domain-containing protein 19
3swp_C1e-56116215174NAC domain-containing protein 19
3swp_D1e-56116215174NAC domain-containing protein 19
4dul_A1e-56116212171NAC domain-containing protein 19
4dul_B1e-56116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021788m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301376.10.0NAC domain-containing protein 86
TrEMBLR0HWP30.0R0HWP3_9BRAS; Uncharacterized protein
STRINGXP_006301376.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28