PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10021860m

Common Name

CARUB_v10021860mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WRKY

Protein Properties

Length: 228aa MW: 26453.8 Da PI: 5.6051

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10021860m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	68.4	1e-21	90	150	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++k+s + r YYrCt+a +C+++k+v++ +++p v +tY +H ++ Carubv10021860m 90 DDGFTWRKYGQKPIKDSLHQRCYYRCTYAkdrNCNATKRVQKIQDNPPVYRTTYLRKHVCK 150 8*************************99999***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	18.315	84	147	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.4E-23	85	150	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-22	87	150	IPR003657	WRKY domain
SMART	SM00774	9.3E-32	89	151	IPR003657	WRKY domain
Pfam	PF03106	7.4E-22	90	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MFSRIDHKAV EALLHGQGCA NNLKMLLENR EIGLVWTEPL LNSILDSFSL VLSSFQNMGG 60 HVSERSSKKK ICGIEGIESY RDESPTPRPD DGFTWRKYGQ KPIKDSLHQR CYYRCTYAKD 120 RNCNATKRVQ KIQDNPPVYR TTYLRKHVCK DFAVHDDTYG SEMIQFDQVV SKQVMPQLTT 180 MNHQAITMEE EDTYNIQECD INDYLVDDDQ FWANQFPPFP SEDPMFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-15	90	150	9	69	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10021860m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301442.1	1e-174	probable WRKY transcription factor 64
Swissprot	Q9C557	1e-117	WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBL	R0I8A6	1e-173	R0I8A6_9BRAS; Uncharacterized protein
STRING	XP_006301442.1	1e-173	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5609	18	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66550.2	1e-119	WRKY DNA-binding protein 67

Link Out ? help Back to Top
Phytozome	Carubv10021860m
Entrez Gene	17894889