PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022010m
Common NameCARUB_v10022010mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 174aa    MW: 20615.1 Da    PI: 9.8234
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022010mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM271.3e-081113911128
              NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101
                      ++e+v  yLk  + + + +  +++++ d+y  +P ++  + +    ++  y  ++r+  +     k+   +sg W+  g+dk ++s+ +g+  g
  Carubv10022010m  11 EDEIVATYLKMIIGDVSWPR-RFLRSQDVYCKNPMTFFaNqAPMILHDGRYLIVNRSLDSG----KTDGCESGCWRVIGRDKLIKSEkTGKILG 99 
                      689************99998.88*************9622222224456788777766543....3334589*************986677789 PP

              NAM 102 lkktLvfy.............kgrapkgektdWvmheyrl 128
                       kk+  f              k++++   k  Wvm+eyrl
  Carubv10022010m 100 FKKVYKFCekeeprsvfkfweKEKRRVRDKRVWVMEEYRL 139
                      99999999655555555554433444456999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.751155IPR003441NAC domain
SuperFamilySSF1019417.45E-2411153IPR003441NAC domain
PfamPF023651.4E-711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEPIRNLQSI EDEIVATYLK MIIGDVSWPR RFLRSQDVYC KNPMTFFANQ APMILHDGRY  60
LIVNRSLDSG KTDGCESGCW RVIGRDKLIK SEKTGKILGF KKVYKFCEKE EPRSVFKFWE  120
KEKRRVRDKR VWVMEEYRLA STWTQGYVIC KIRLLNPNPL EFMLCNHVRG YYV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022010m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301572.11e-127uncharacterized protein LOC17895568
TrEMBLR0I8R21e-126R0I8R2_9BRAS; Uncharacterized protein
STRINGXP_006301572.11e-126(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.12e-74NAC family protein