PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022120m
Common NameCARUB_v10022120mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 221aa    MW: 24907.2 Da    PI: 5.5806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022120mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.49.4e-1682136859
                      EEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   8 rKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +KYGqK++k s++ r YYrC++a   +C+ +k+v++ +++p v  ++Y g+H ++
  Carubv10022120m  82 KKYGQKKIKTSPYQRCYYRCSYAkdlNCKGTKRVQKIKDNPPVYRTIYMGKHVCK 136
                      7*********************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.71E-1582136IPR003657WRKY domain
SMARTSM007745.9E-1782137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-1582136IPR003657WRKY domain
PROSITE profilePS5081114.19482133IPR003657WRKY domain
PfamPF031061.2E-1582136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVSNIDHKAV GALLHGQECA NSLKKLFENG EISLGSAKPL IDTILDSFSL VLSCMESPNP  60
PQHYESSFGN IAGFVLQRPS TKKYGQKKIK TSPYQRCYYR CSYAKDLNCK GTKRVQKIKD  120
NPPVYRTIYM GKHVCKAFTI HDDDTYSSQM IQFDQVVSEP VMPQLAAIDH QATTMEDIAI  180
DQTMNQECDI NDLLVDYDQF WANQFPSGDT MFLDDIASFY *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022120m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301477.11e-138probable WRKY transcription factor 64
SwissprotQ93WV73e-99WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLR0GBZ31e-165R0GBZ3_9BRAS; Uncharacterized protein
STRINGXP_006300359.11e-166(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.21e-102WRKY DNA-binding protein 67