PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022233m
Common NameCARUB_v10022233mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 243aa    MW: 26842.4 Da    PI: 8.602
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022233mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.13.1e-1035632250
                     HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50
                     KKA ELSvLC+  v  i +++++ l+ ++
  Carubv10022233m 35 KKATELSVLCGNSVGFICYGPDNDLHVWP 63
                     79*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.3911766IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-112097IPR002100Transcription factor, MADS-box
PfamPF003199.1E-82262IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPLRVKKPN KSYGLDDDLK TKRIFFKRIF PAFKKKATEL SVLCGNSVGF ICYGPDNDLH  60
VWPEPKDNPQ ALPEIVGKFN ALSDHRRMSH ASDLFDFPNL KGLSGEELRS HLDELNSRLA  120
GIKQQKIGLL RRGNFKPKIK ETGKDDHIRV SDKGNRLGFD ELGYVFRGSH ETVSNLGSCA  180
ASKVSSDVAV SDPSLTLGFS GGDYLPVDSV PTTDNYGVCA NEGASDLRRM EFASTLFPGY  240
DRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022233m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072589e-43AC007258.3 Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence, complete sequence.
GenBankCP0026849e-43CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT2K109e-43AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301772.21e-180agamous-like MADS-box protein AGL49
SwissprotQ9ZUI98e-63AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLR0I9881e-178R0I988_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006301772.11e-179(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.11e-62AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]