PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022252m
Common NameCARUB_v10022252mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18930.3 Da    PI: 9.4767
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022252mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i ++  r vtf kR+ g+lKK +EL +LC+  ++ ii+s+
  Carubv10022252m 11 ITDNATRRVTFRKRKDGLLKKISELTILCGLPACAIIYSE 50
                     77888999*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.7E-17160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-20185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.367150IPR002100Transcription factor, MADS-box
CDDcd002666.26E-20285No hitNo description
PRINTSPR004041.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRRKVTHQL ITDNATRRVT FRKRKDGLLK KISELTILCG LPACAIIYSE YKDGPELWPN  60
ISEVRSLLQR LSELPVEKQI KYMMDQKDLM EKMIQDAEKK LEREKRHTRA MNLGIMASTN  120
DITTESDCSE ELLKAAEVVD KKLKLIQERI KAVEAGAPII MMRE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLITDNATRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022252m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546010.0AC254601.1 Capsella rubella clone CAP30-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301788.11e-117agamous-like MADS-box protein AGL80
TrEMBLR0GG791e-116R0GG79_9BRAS; Uncharacterized protein
STRINGXP_006301788.11e-116(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-102AGAMOUS-like 87