PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022369m
Common NameCARUB_v10022369mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 1022aa    MW: 113680 Da    PI: 5.8512
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022369mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.97.9e-53441602117
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      ++e ++rwlk+ e+  iL+n+e+ +lt ++++rp sgsl+L+n++++++frkDG++w++k+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf
  Carubv10022369m  44 YQEaRTRWLKPPEVQFILQNYERLKLTDTAPQRPASGSLFLFNKRVLKFFRKDGHQWRRKRDGRAIAEAHERLKVGNAEALNCYYAHGEHDPTF 137
                      56779***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylev 117
                      +rr+yw+L+ e+e+ivlvhy++v
  Carubv10022369m 138 RRRIYWMLDPEYEHIVLVHYRDV 160
                      *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.36940166IPR005559CG-1 DNA-binding domain
SMARTSM010762.8E-7843161IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4646160IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.88E-17456540IPR014756Immunoglobulin E-set
CDDcd001022.61E-7456541No hitNo description
PfamPF018337.2E-8456539IPR002909IPT domain
Gene3DG3DSA:2.60.40.103.4E-8456543IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.202.0E-15638745IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-16639747IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.406652744IPR020683Ankyrin repeat-containing domain
CDDcd002041.64E-13657744No hitNo description
PfamPF127963.4E-8673745IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0021685714IPR002110Ankyrin repeat
PROSITE profilePS5008810.766685717IPR002110Ankyrin repeat
SMARTSM002481300724753IPR002110Ankyrin repeat
SMARTSM0001581802824IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.36E-9803911IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.638803831IPR000048IQ motif, EF-hand binding site
SMARTSM000150.51859881IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627860889IPR000048IQ motif, EF-hand binding site
PfamPF006120.0044861880IPR000048IQ motif, EF-hand binding site
SMARTSM000155.4E-5882904IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865883907IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4885904IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MGSVAGDLYS STCDIATIFV AICRNPPLRF LFSSVHKYDI GTLYQEARTR WLKPPEVQFI  60
LQNYERLKLT DTAPQRPASG SLFLFNKRVL KFFRKDGHQW RRKRDGRAIA EAHERLKVGN  120
AEALNCYYAH GEHDPTFRRR IYWMLDPEYE HIVLVHYRDV SDREEGNQTN GQVYQFAPVP  180
TTHFSSPNSI GTQNASYNHY IGDSTDIHQH SSTSHGTAEV ISELEGSASS SELGQALKKL  240
KEQLSIGDEH VDSIDPPYIQ PESLDSLQFL GCSNDIDHLP QPTTRYQRPE NNKLERCYGG  300
NFGAQYNAKN DSNKLERCYG GYVGAQDRSS NLMLVKNDSG GTGGSVDEGS GSWKDVLEAC  360
EATIPHNSEG STPSSAKGIL AGIQEDSNWS YSNQVDQSTF LLPQDLGSFE VPASYSALGA  420
PEDNGEYCPM MDDGGEFELP FEQEMSQTGA HQLKFTIQDI SPEWGYVNET TKVIIIGSFL  480
CDPAESMWSC MFGSAKVPIE IIKEGVIRCK APPCGPGKVN LCVTSADGLS CSEIREFEYR  540
DKPDTSCLKC TLSQTSDMST STDQLLLLVK FVQTLMSDQR SEGESNSELG NDKRLKKLKA  600
DDDQWTHVIG EIRDGSSSST RRVDWLLQEL LKDKLEAWLS SRSKDRDSWS KQEQCIIHMI  660
AGLGFEWALY PILGHGVSVD FRDINGWSAL HWAARFGSEK MVAALIASGA SAGAVTDPSQ  720
QDPNGKTAAS IAASNGHKGI AGYLSEVALT NHLSSLTLGE TEISKDSAQV QAEITVNSIS  780
EPGPSDNEDQ ISLEKTLAAV RNAAQAATRI QEAFRAHSFR KRKQREAAMA ACLQEYGIYC  840
EDIEGISAMS KLTFGNVKNY HSAALSIQKK YRGYKGRKEF LELRQKVVKI QAHVRGYQIR  900
KHYKVICWAV GVLDKVVLRW RRKGAGLRGF RQDVETTDDS EDEDILKVFR KQKVDGAVNE  960
AFSRVLSMAN SPEARQQYHR VLKRYCQTKA ELGKTETLVG DDDDGLFDIA DMEFNSLFTL  1020
P*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022369m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100260.0AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643087.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLR0GG070.0R0GG07_9BRAS; Uncharacterized protein
STRINGXP_006301894.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]