PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022391m
Common NameCARUB_v10022391mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 239aa    MW: 25746.9 Da    PI: 7.4438
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022391mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.7e-294104196
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++  +q
  Carubv10022391m   4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWTGNWAQCQ 97 
                      6*********************9999767889************************************************************** PP

           DUF260  90 lkaelal 96 
                      ++++++l
  Carubv10022391m  98 AAVDAVL 104
                      *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8413109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH  60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWT GNWAQCQAAV DAVLNGLPIT HTPLPSASAS  120
NQIIPPHRTY DIRHVAKDPA PGGDSSEGLA TRANANKSKT QTGRFKRLAE SVNQLGECSH  180
DTWQFPSSGA THGYGHFTLE TVEVRGEAAP FNQSSSNVGF DDQVQVDINE VGLELRLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022391m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738690.0AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds.
GenBankAF4478960.0AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301915.11e-179LOB domain-containing protein 42
SwissprotQ9CA301e-160LBD42_ARATH; LOB domain-containing protein 42
TrEMBLR0IDP81e-178R0IDP8_9BRAS; Uncharacterized protein
STRINGCagra.3364s0006.1.p1e-178(Capsella grandiflora)
STRINGXP_006301915.11e-178(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-162LOB domain-containing protein 42