PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022431m
Common NameCARUB_v10022431mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17923.6 Da    PI: 9.6557
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022431mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.7e-141563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie +  r vt+skRrngi  K  ELSvLC + +a + +  +gk +++
  Carubv10022431m 15 KKIERSKDRLVTLSKRRNGIYTKLCELSVLCRIHIAFLGYTDSGKPFTF 63
                     68999***************************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.03E-19777IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.184767IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-14766IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-13929IPR002100Transcription factor, MADS-box
PfamPF003196.7E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MNTKKSKGKQ KINIKKIERS KDRLVTLSKR RNGIYTKLCE LSVLCRIHIA FLGYTDSGKP  60
FTFGSPSFQA NVQELCTLYN NVVEQTRAEE VKAMKAAASM EPFPEDAWWK MHMTKEQDQE  120
EAKKFLDKFE GLYEKLCDEI DVRSQRRDAA RNHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022431m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301316.11e-105agamous-like MADS-box protein AGL29
TrEMBLR0I9Q71e-112R0I9Q7_9BRAS; Uncharacterized protein
STRINGXP_006301952.11e-113(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-47AGAMOUS-like 64