PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10022732m

Common Name

CARUB_v10022732mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 720aa MW: 79393.6 Da PI: 6.2079

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10022732m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.00068	556	593	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Carubv10022732m 556 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIRHMLFLQ 593 67799************55......5555557777777776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.8E-29	6	150	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	7.66E-4	537	594	No hit	No description
PROSITE profile	PS50888	11.23	543	592	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-4	556	612	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-5	556	611	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MGSTSQEILR SFCSNTDWNY AVFWKLNHRS RMVLTLEDAY YDNNTIPKNM HGAHDLLGLA 60 VAKMSYHVYS LGEGIVGQVA VSGEHQWVFP EYYDNCHAEF EFHNVWESQM SAGIKTILVV 120 AVGHCGVVQL GSLRKVNEDV NLVNHIRHLF LALRDPLADH AANLMQCNMN NSLCLPNIPS 180 EGLHAKAFPD CSGEVAKAMD VDESNILTQY KTSNSLPYNT PSSSLLMENA AQVVGDRDVV 240 QGSTCGSYSG VTFGFPVDVV DAKYASHLGT NIISDASHVG MTSGCKDPRG LDPNLQQYMK 300 NHVLSNTSSS ALAIEAERMI TAHSYPGLDS TFHASPGTEK ESSYQNEVLQ LSENHGNKHL 360 KESERMLERK CESSRSDALI SPGYTFAGSE LLEALGSAFK KTSTGQEDLL KSENRSTIRP 420 TDDMSHSQLT FDSGPENLLD AVVANVCQSD GNARDDMLSS RSVQSLLTTM EVAEPSGQKK 480 HNNVISVDSA MKQLPLVEVD TQQNSSDICG AFSSIGFSST YPSSSSDQFQ TSLDMPKKNK 540 KRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIRHML FLQNVTKHAD 600 KLSKSAKTKM QQKETGMQGS SCAVEVGGHL QVCSIIVENL NKQGMVLIEM LCEECSHFLE 660 IANVIRSLDL VILRGITETQ GEKTWICFVT ESQNSKVMQR MDILWSLVQI FQPKANVKM*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MGSTSQEILR SFCSNTDWNY AVFWKLNHRS RMVLTLEDAY YDNNTIPKNM HGAHDLLGLA  60
VAKMSYHVYS LGEGIVGQVA VSGEHQWVFP EYYDNCHAEF EFHNVWESQM SAGIKTILVV  120
AVGHCGVVQL GSLRKVNEDV NLVNHIRHLF LALRDPLADH AANLMQCNMN NSLCLPNIPS  180
EGLHAKAFPD CSGEVAKAMD VDESNILTQY KTSNSLPYNT PSSSLLMENA AQVVGDRDVV  240
QGSTCGSYSG VTFGFPVDVV DAKYASHLGT NIISDASHVG MTSGCKDPRG LDPNLQQYMK  300
NHVLSNTSSS ALAIEAERMI TAHSYPGLDS TFHASPGTEK ESSYQNEVLQ LSENHGNKHL  360
KESERMLERK CESSRSDALI SPGYTFAGSE LLEALGSAFK KTSTGQEDLL KSENRSTIRP  420
TDDMSHSQLT FDSGPENLLD AVVANVCQSD GNARDDMLSS RSVQSLLTTM EVAEPSGQKK  480
HNNVISVDSA MKQLPLVEVD TQQNSSDICG AFSSIGFSST YPSSSSDQFQ TSLDMPKKNK  540
KRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIRHML FLQNVTKHAD  600
KLSKSAKTKM QQKETGMQGS SCAVEVGGHL QVCSIIVENL NKQGMVLIEM LCEECSHFLE  660
IANVIRSLDL VILRGITETQ GEKTWICFVT ESQNSKVMQR MDILWSLVQI FQPKANVKM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10022732m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY954808	0.0	AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293452.1	0.0	transcription factor bHLH155
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	R0HM95	0.0	R0HM95_9BRAS; Uncharacterized protein
STRING	XP_006293452.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Carubv10022732m
Entrez Gene	17888570

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]