PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022743m
Common NameCARUB_v10022743mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 713aa    MW: 79716.6 Da    PI: 8.1256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022743mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-085799347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Carubv10022743m 57 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 99
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1148104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-552102IPR009057Homeodomain-like
PROSITE profilePS5129313.5253104IPR017884SANT domain
SMARTSM007175.1E-654102IPR001005SANT/Myb domain
PfamPF002493.0E-65799IPR001005SANT/Myb domain
CDDcd001671.81E-557100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MLNQFARYCE MQAEQKPGGP IYEGHISNQN SNPNLLSSAS ISVAQFPVKK PTRQWAAWTH  60
QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LCLDAKNPKD  120
TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK LFIEALEHQL LKDRRKSIRK RACQGENFSS  180
ASLGNISSHS RERGLDNRPF KLILSDSQNV KKLGSGRAST KHGESLGVNL GDEKEDSAFG  240
RGGRQRRKQG YRKWEKLAID GVSLVADAAE HLERTSIDKD MDDQKDLGSP RYLTGKSPLS  300
LCSSGDVPLS DANMQFSAKL KLQLFPIDEC TRRSLEMDKH NPHLELTLSN RKKISSVLEH  360
INRKWGSSSC ATGELMLFPY NARKETVTCH QRWTHDSFLS AAEVHSMVGS PSIFRLRYGW  420
FVHDSSGSFI SQVPTSDLCP SHEDDMNVDG VNEVNMLLTE SGPLSVHLTA EQPTSVEPSL  480
GLVCASGDTD DRPTESRDDY EPASLTITPF ENLSSVNAQS AGEWADSLTN ISIGDLLSEV  540
PDDIDSDDVD PPATEGSHYL LRDVSFASES FDAAIAAHIL RHQNKPSTLL PSTSGSSSLW  600
DDEETRDAFS FQKNRFADSS KLANVTFPGG IARVNGKSSQ LVEVIISVSN SNSTIVYTNK  660
SSDTILSLRL YPPTRSFLTT ESLWKRVQQT PIRWILQGRP IVGLRIYIGL TR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022743m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640301.10.0TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLR0FUS80.0R0FUS8_9BRAS; Uncharacterized protein
STRINGXP_006293769.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1