PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022786m
Common NameCARUB_v10022787mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 672aa    MW: 74085 Da    PI: 6.873
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022786mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-094735101954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  Carubv10022786m 473 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 510
                      665569******************************88 PP
2BELL124.25.3e-40331402172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  Carubv10022786m 331 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAAQL 402
                      589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.6E-85257400IPR006563POX domain
PfamPF075261.4E-51263399IPR006563POX domain
PROSITE profilePS5007112.86451514IPR001356Homeobox domain
SMARTSM003891.1E-9454518IPR001356Homeobox domain
CDDcd000861.02E-12454515No hitNo description
SuperFamilySSF466891.37E-17455521IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28457520IPR009057Homeodomain-like
PfamPF059203.1E-18471510IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MGLVTTTTTT TLLHHQDLDS SSSMSQDYHH HHHHQGIFSF SNGFHRSSST THQEEVDESA  60
VSGAAQILVY ESSAGMLSEM FAYPGGGGGG GSSGEILDQS STKQLLEQQN RHNNNNSSTL  120
HMLLPNHHQQ QGFAFTDENT IQEQQQQHFT WPSSSDHHHQ QQNRDMIGTV HVEGGKGLSL  180
SLSSSLAAAK AEEYRSIYCA AVDGTSSSSN ASAHHHQYNQ FKNLLLDNSS SSHHHHHQVV  240
GHFGSSSSSP MAASSSIGGI YTLRNSKYTK PAQELLEEFC SVGRGHIKKN KLSRNNSNPN  300
TTGGGGGGGG GGGSSSSAGT ANDSPPISPA DRIEHQRRKV KLLSMLEEVD RRYNHYCEQM  360
QMVVNSFDQV MGYGAAVPYT TLAQKAMSRH FRCLKDAVAA QLKRSCELLG DKEGAGAASS  420
GLTKGETPRL RLLEQSLRQQ RAFHHMGMME QEAWRPQRGL PERSVNILRA WLFEHFLNPY  480
PSDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQEAKEREEE EANENENKNE  540
QQRRQQQTNN NNNNNDTKPN NENNFTTHVI TTQTPTTMTS THHDNDPSFL PSIVAAASHG  600
CSDAFTVTTC HQQDVVVSDF HVIDGAANVI RFGTKQPGDV SLTLGLRHSG NIPDNNNNTS  660
SFSVRDFGDF H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-16460517158Homeobox protein Meis1
4xrs_B8e-16460517158Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301313TGGGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022786m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0581790.0AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBankAY1420190.0AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293805.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLR0FUV80.0R0FUV8_9BRAS; Uncharacterized protein
STRINGXP_006293804.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]