PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023228m
Common NameCARUB_v10023228mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 441aa    MW: 47566.1 Da    PI: 4.8673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023228mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31228286259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Carubv10023228m 228 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 286
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-31221288IPR003657WRKY domain
PROSITE profilePS5081133.109222288IPR003657WRKY domain
SuperFamilySSF1182902.88E-26225288IPR003657WRKY domain
SMARTSM007741.4E-37227287IPR003657WRKY domain
PfamPF031069.2E-26229286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MCSVFDQLLN MDNFQGDLTD VVRGIGSGHV SSPDPPEVPS PSTISRPPTS SDLHVDFPTA  60
AASVSCLLTN PFGDPFVSMT SDPLFHLAAS SGYLPVAGDN KSDNSFAIFP KGFDEDDHIK  120
SQCSVFPRIR ISESNIIHDG STCNSPAIAV SNAPSSPWGM IGVDTTNSPR NCLLVDNSNN  180
TSSSSQIQIS SSPRNLGIKR RKGQTKKVVC IPAPAAMNSR SSGEVVPSDL WAWRKYGQKP  240
IKGSPYPRGY YRCSSSKGCS ARKQVERSRT DPNMLVITYT SEHNHPWPTQ RNALAGSTRS  300
SSSSSSNLST KSSTAAATTT SPSSRVSQNN NNKDEPNKSH LPSSSTPPPY AAAGIKEENV  360
EERRDNMEFD NDGEDTYKPE LLPEFQHQSE DFFADLDELE GDSLTMLLSH SSGGGNMETD  420
TTIPDVFSDF FDDDDSSRSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25204289480Disease resistance protein RRS1
5w3x_D4e-25204289480Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023228m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294231.10.0probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLR0HCF30.0R0HCF3_9BRAS; Uncharacterized protein
STRINGXP_006294231.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.10.0WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]