PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023272m
Common NameCARUB_v10023272mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 428aa    MW: 47137.6 Da    PI: 8.7754
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023272mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.8e-1370126155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Carubv10023272m  70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 126
                      57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1570135IPR016177DNA-binding domain
PfamPF008476.1E-970126IPR001471AP2/ERF domain
PROSITE profilePS5103218.51871134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-1271135IPR001471AP2/ERF domain
SMARTSM003805.3E-1971140IPR001471AP2/ERF domain
PRINTSPR003674.3E-57283IPR001471AP2/ERF domain
PRINTSPR003674.3E-5116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASVSSSDHG PKTEAGCSGG GGGGESSETV AASDQMLLYR GFKKAKKERG CTAKERISKM  60
PPCTAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQGAYDDE EAAARAYDLA  120
ALKYWGPGTL INFPVTDYTR DLEEMQNLSR EEYLASLRRY PFGRKSSGFS RGIAKYRGLQ  180
SRWDASTSRM PGPEYFSNIH YGAGDDRGTE GDFLGSFCLE RKIDLTGYIK WWGVNKTRQP  240
ESSSKASEDA KVEDAGTELK ILEHTSQATE PYKAPNLGVL RGTQRKEKEI SSPSSSSALS  300
ILSQSPAYKS LEEKVLKMQE KNTNENDENA NHNIISMEKN HGKAIEKPVV SHEIALGGAS  360
AALSLQKSMY PLTSLLTAPL LTNYSTMDPL ADPILWTPFL PSGSSHTSEV TKTETSCSTY  420
SYIPQEK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023272m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187890.0AK118789.1 Arabidopsis thaliana At2g41710 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL21-12-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639692.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLR0HSZ60.0R0HSZ6_9BRAS; Uncharacterized protein
STRINGXP_006294275.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.20.0AP2 family protein