PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023278m
Common NameCARUB_v10023273mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 425aa    MW: 46531.4 Da    PI: 9.7192
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023278mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32160216360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkversa +++v ei+Y+geHnh+k
  Carubv10023278m 160 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSA-EGQVSEIVYQGEHNHSK 216
                      9***************************************.***************85 PP
2WRKY1031.6e-32347404259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
  Carubv10023278m 347 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 404
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28156217IPR003657WRKY domain
SMARTSM007743.9E-34158216IPR003657WRKY domain
SuperFamilySSF1182901.28E-24159217IPR003657WRKY domain
PfamPF031064.5E-25160214IPR003657WRKY domain
PROSITE profilePS5081122.905160217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-32336404IPR003657WRKY domain
PROSITE profilePS5081131.766341406IPR003657WRKY domain
SuperFamilySSF1182903.66E-27342404IPR003657WRKY domain
SMARTSM007743.9E-38346405IPR003657WRKY domain
PfamPF031066.8E-26347404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEGERVVIAK PVASRPSSSS SFRTFTELLT DTVTVSPQSN CHDIVDAAIR PKTLRFNQPV  60
AASVSCPRVE GNSNGNGKSC DDSDSRSYVV YKPKAKLVSK ATVSALANMG NRQQIWRQTE  120
AVGYGKSVSQ GTYRAGPNPI QKVPSFSESE SSIGDRSSVD GYNWRKYGQK QVKGSECPRS  180
YYKCTHPKCP VKKKVERSAE GQVSEIVYQG EHNHSKPSCP LPRRASSSTS SGFQKPPKGL  240
ASEGSMGQDH NNNLYRPLWS NQSNDSSKTR TEKMNEGCVI TPFEFAVPRS TNSNAGTSDS  300
GCRSSQCDEG SIGGELDDPN RTKRRKNEKQ SSEAGVSQGS VESDSLEDGF RWRKYGQKVV  360
GGNAYPRSYY RCTSANCRAR KHVERASDDP RAFITTYEGK HNHHLILNPP ASSTLPFNSQ  420
QLSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28160405378Probable WRKY transcription factor 4
2lex_A3e-28160405378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023278m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2896070.0AB289607.1 Arabidopsis thaliana TTG2 mRNA for WRKY transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640145.10.0WRKY transcription factor 44 isoform X2
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLR0HCI20.0R0HCI2_9BRAS; Uncharacterized protein
STRINGCagra.0666s0018.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]