PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023444m
Common NameCARUB_v10023444mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 378aa    MW: 43606.2 Da    PI: 10.2402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023444mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15691197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ffk l     + s+ l++p  f+ +++g + e+kt+ l++  s  +W+vk+  ++ +    lt+GWkeF+ a++L+ gD+vvF+ ++++ f  +v+
  Carubv10023444m  6 FFKPL--LPGFYSH-LTIPIAFLLNIKGRN-EQKTVELRSdASKITWKVKI--DGER----LTDGWKEFAVAHDLRIGDIVVFRQERDMAF--HVT 89
                     56666..5566676.9*******9997765.55799999868889******..9998....***********************7777888..776 PP

                     EE CS
               B3 96 vf 97
                     ++
  Carubv10023444m 90 LL 91
                     65 PP
2B377.91.1e-24139232499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + +++++l  +rl +p++fa+e+g++++++ +++l++e+grsW+v l+ + + g+ ++++GW++F++angL +g f++F+l++ ++++lv+++f
  Carubv10023444m 139 ANITPSTLLYDRLHFPRSFARENGLDTRCG-EIVLMNEKGRSWTVDLRGKSSCGSAYIKRGWRSFCHANGLSAGSFFTFRLIQ-RGRTLVLRLF 230
                      56788889999***************9987.****************98888899***************************9.5666888888 PP

                      -S CS
               B3  98 rk 99 
                       k
  Carubv10023444m 231 PK 232
                      65 PP
3B365.67.5e-21282377198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ +++ ++ +++rl+lp +f+++ g+     k++++ d++g +W+ +l+++k ++r+ l +GWkeF++an++k g++v+++l++++ ++ v+
  Carubv10023444m 282 FVTLTLTRYNVSLSRLTLPIPFTKASGIR--LAKEMSFLDKHGVKWSTRLRFEKERKRMRLVGGWKEFCNANHVKIGESVLLELIWEKHKSSVL 373
                      67788899***************999876..7789***************************************************99988999 PP

                      EEE- CS
               B3  95 kvfr 98 
                      k+++
  Carubv10023444m 374 KFCS 377
                      9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.252394IPR003340B3 DNA binding domain
SuperFamilySSF1019363.4E-194100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-14491No hitNo description
Gene3DG3DSA:2.40.330.101.5E-215106IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-21694IPR003340B3 DNA binding domain
PfamPF023629.8E-111587IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-24129228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-22134235IPR015300DNA-binding pseudobarrel domain
CDDcd100178.99E-24136231No hitNo description
PROSITE profilePS5086315.834136233IPR003340B3 DNA binding domain
SMARTSM010198.4E-31137233IPR003340B3 DNA binding domain
PfamPF023627.0E-24138232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22274377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-22278376IPR015300DNA-binding pseudobarrel domain
CDDcd100178.14E-18281376No hitNo description
PROSITE profilePS5086314.24282378IPR003340B3 DNA binding domain
PfamPF023623.1E-20282378IPR003340B3 DNA binding domain
SMARTSM010193.0E-21282378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MASKHFFKPL LPGFYSHLTI PIAFLLNIKG RNEQKTVELR SDASKITWKV KIDGERLTDG  60
WKEFAVAHDL RIGDIVVFRQ ERDMAFHVTL LGPSCCEIQY VSCLEDHNNL RMIQRKKRVR  120
KNPRREAESS SLDPSCFVAN ITPSTLLYDR LHFPRSFARE NGLDTRCGEI VLMNEKGRSW  180
TVDLRGKSSC GSAYIKRGWR SFCHANGLSA GSFFTFRLIQ RGRTLVLRLF PKETEEEEVE  240
VVCLSTEEES DKERSQDDSQ ECSKRKEKKI SKASSSGSQN RFVTLTLTRY NVSLSRLTLP  300
IPFTKASGIR LAKEMSFLDK HGVKWSTRLR FEKERKRMRL VGGWKEFCNA NHVKIGESVL  360
LELIWEKHKS SVLKFCSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023444m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294430.20.0B3 domain-containing protein REM14
SwissprotO230761e-128REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLR0HTE70.0R0HTE7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006294430.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-122B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]