PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023535m
Common NameCARUB_v10023535mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 351aa    MW: 39887.4 Da    PI: 4.3127
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023535mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.82.4e-3152144597
           DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                        w+++De+v+L G++df+++t+ s  +d da+y+++k+ +++++sk+ql++K+r+LK+Kf ++++++++gke sf+ ++d+ if+ls++iW 
  Carubv10023535m  52 IKWTKNDELVILGGIVDFENETKLSFRSDRDALYHYIKDYVESNFSKRQLIDKVRSLKRKFIDNQARSNDGKELSFTDTDDDAIFKLSMMIWA 144
                      45******************************************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-2353143IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVATKRLGDH SDSNSDDSLT RKRDDDVDAM RRKRKQLKTT TATLVPPSAS KIKWTKNDEL  60
VILGGIVDFE NETKLSFRSD RDALYHYIKD YVESNFSKRQ LIDKVRSLKR KFIDNQARSN  120
DGKELSFTDT DDDAIFKLSM MIWAKNETEH VGEDLNQAKD VPSGGQERKN VTCTEQEQVS  180
VEVENGEKEK LDQAKDVPCE EQEDMDVPCE EQEGKDMPCE EQERVSVEND NGEQEMSEED  240
GVGELGVMED TLDSGITLLD SAKNGEKDKS EEEGVYELGV LQGILEGDTF YQNCGKFQQK  300
MLRQNLEKIG AEKRKQLIDE WNALMVEELK LYVKKLTFLA ELLEMGEVSP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12034RKRDDDVDAMRRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023535m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294504.10.0GLABROUS1 enhancer-binding protein-like 3
SwissprotQ9SJM41e-144STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLR0FWQ60.0R0FWQ6_9BRAS; Uncharacterized protein
STRINGXP_006294504.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-146DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]