PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023643m
Common NameCARUB_v10023643mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 323aa    MW: 35549.7 Da    PI: 8.8571
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023643mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.1e-18237271135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Carubv10023643m 237 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 271
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-15231281IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-14235295No hitNo description
PROSITE profilePS5011411.227235267IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-13235269IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.75E-13236283No hitNo description
PfamPF003209.7E-16237271IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVTLSARSLA LSHSLSLSSS PLLKTLLTSH TESERDRVRV FFCNSLELEK IKPINHKMDL  60
YGLSSPDLLR IDDLLDFSNE DIFSASSNNS GGSTAATSSS SFPPPQNPNF HHHHLPSSAD  120
HHSFLHDICV PSDDAAHLEW LSQFVDDSFA DFPANPLGGT MASVKSETSF PGKPRSKRSR  180
APAPFAGTWS PMPPESEHQQ LHNAAKFKPK KEQSGGGGGR HQSSSSESGE GGGMRRCTHC  240
ASEKTPQWRT GPLGPKTLCN ACGVRFKSGR LVPEYRPASS PTFVLTQHSN SHRKVMELRR  300
QKEVMRQPQQ VQLHHHHHHH PF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023643m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294606.10.0GATA transcription factor 2
SwissprotO497411e-152GATA2_ARATH; GATA transcription factor 2
TrEMBLR0HDA60.0R0HDA6_9BRAS; GATA transcription factor
STRINGXP_006294606.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-118GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]