PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10023649m

Common Name

CARUB_v10023644mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 322aa MW: 35789.4 Da PI: 6.2435

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10023649m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	190	233	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + Carubv10023649m 190 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 233 8999********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-13	186	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	188	240	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.86E-11	190	244	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.1E-13	190	241	No hit	No description
Pfam	PF00170	4.2E-9	190	234	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.48E-24	191	241	No hit	No description
PROSITE pattern	PS00036	0	193	208	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MAQLPPKIPN MTPHWPDFSS QKLSPFSTPT ATVAAATTTV QNPSWVDEFL DFSASRRGNH 60 RRSISDSIAF LEAPTVSDHV SIENIHFDRF DDEQFMSMFT DDGDLQNNTS HINNILGTTG 120 SSSNTPTPSN SINDDNKEPP SIYHDMNNTN NNCNNNNDEV QSQCKTEPDD GSASNNNSGD 180 SSGNRILDPK RVKRILANRQ SAQRSRVRKL QYISELERSV TSLQAEVSVL SPRVAFLDHQ 240 RLLLNVDNSA LKQRIAALSQ DKIFKDAHQE SLKREIERLR QVYNQQSLTK MDNANHSPAT 300 GAVAASAVEI KKSIEKEQLL N*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10023649m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294608.1	0.0	basic leucine zipper 34
Swissprot	F4IN23	1e-167	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	R0FXS2	0.0	R0FXS2_9BRAS; Uncharacterized protein
TrEMBL	R0HQG6	0.0	R0HQG6_9BRAS; Uncharacterized protein
STRING	XP_006294608.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-152	bZIP family protein

Link Out ? help Back to Top
Phytozome	Carubv10023649m
Entrez Gene	17889367

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]