PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023833m
Common NameCARUB_v10023833mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 274aa    MW: 31514.7 Da    PI: 9.0656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023833mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50151371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp      ++e yfFs+++ ky++g+r+nr+t sgyWkatg dk++ +
  Carubv10023833m  15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTKEAKYPNGNRSNRSTGSGYWKATGIDKQIGK 104
                      79****************************.99***************44...47899**********************************99 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+ +vg+kktLvfykg+ p+g++t+Wv+heyrl
  Carubv10023833m 105 -KKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 137
                      .9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6010158IPR003441NAC domain
PROSITE profilePS5100556.41615158IPR003441NAC domain
PfamPF023655.2E-2716137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEKRSSIKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL  60
PGDCDSERYF FSTKEAKYPN GNRSNRSTGS GYWKATGIDK QIGKKKLVVG MKKTLVFYKG  120
KPPNGTRTNW VLHEYRLVDS QLDSSYNMNW VLCRVFLKKR SNSNKRKEEE EERDELENEK  180
ETEIEENKKS RSTSTCPIFY DFMRKEDKKK RRRRRCCDLN LAPAASSCCC CFCSSSGSSS  240
SVCSSALTQT SSNDTHNYHE EITCRENKFC LFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-531316518174NAC domain-containing protein 19
3swm_B7e-531316518174NAC domain-containing protein 19
3swm_C7e-531316518174NAC domain-containing protein 19
3swm_D7e-531316518174NAC domain-containing protein 19
3swp_A7e-531316518174NAC domain-containing protein 19
3swp_B7e-531316518174NAC domain-containing protein 19
3swp_C7e-531316518174NAC domain-containing protein 19
3swp_D7e-531316518174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212KKKRRR
2208214KKRRRRR
3209214KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023833m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294782.10.0NAC domain-containing protein 41
SwissprotO227981e-133NAC41_ARATH; NAC domain-containing protein 41
TrEMBLR0HQU60.0R0HQU6_9BRAS; Uncharacterized protein
STRINGXP_006294782.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.21e-127NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]