PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023839m
Common NameCARUB_v10023839mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 273aa    MW: 31552.3 Da    PI: 5.1391
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023839mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.2e-35691612103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y+++ed++++e+isw+e+g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF ++ F+kgk+el++
  Carubv10023839m  69 FLVKTYKVVEDPTTDEVISWNEDGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFCNEMFQKGKRELMS 153
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  Carubv10023839m 154 NIRRRKSQ 161
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.26E-3265158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-5665158IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3666158IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-3069158IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-186992IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-18107119IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340108132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-18120132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVRAVEGTLS VIPLAKHQYN KEKDLNILYF SFMEDAGDHL RCNDEERLPL AFMVGTSTST  60
AELQPPPPFL VKTYKVVEDP TTDEVISWNE DGTGFVVWQP AEFARDLLPT LFKHCNFSSF  120
VRQLNTYGFR KVTTIRWEFC NEMFQKGKRE LMSNIRRRKS QHWSNNKSHH QVVPTTSTVK  180
QEDHQRLGID HHHEDQRSCS TSSSCVYTAL LDENKCLKHE NELLSSELGE TKNKCKQLME  240
LVEKYRGEDE DETDENDDED DDGLKLFGVK LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-216715818120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023839m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294520.0BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640748.10.0heat stress transcription factor B-3
SwissprotO222301e-146HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLR0FXE80.0R0FXE8_9BRAS; Uncharacterized protein
STRINGXP_006294789.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-148heat shock transcription factor B3