PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023876m
Common NameCARUB_v10023876mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 261aa    MW: 29380 Da    PI: 8.6887
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023876mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.7e-30134193159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK  ++++ pr+Y+rC+++ +C vkkkv+rsaedp++v+ tYeg+Hnh+
  Carubv10023876m 134 VKDGYQWRKYGQKITRDNPSPRAYFRCSFSpSCLVKKKVQRSAEDPSFVVATYEGTHNHP 193
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-28125195IPR003657WRKY domain
SuperFamilySSF1182901.83E-25131195IPR003657WRKY domain
SMARTSM007742.9E-33134194IPR003657WRKY domain
PfamPF031065.4E-24135193IPR003657WRKY domain
PROSITE profilePS5081126.923136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0031347Biological Processregulation of defense response
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDYDLNTNPF DLHFSGKLPK REPSDSGSED VMRKWFVKDE TCMLQEELTR VNSENKKLTE  60
TLARVSEKYS ELQNLFKELQ SRENVNFCNE RKRKQDRDEF VSSPIGISCG GTVEKSTVST  120
AYFHAEKSDT SLTVKDGYQW RKYGQKITRD NPSPRAYFRC SFSPSCLVKK KVQRSAEDPS  180
FVVATYEGTH NHPGPNASVS RTVKLDLVQG GLEPVEEKKG RGTIQDVLVQ QMASSLTKDP  240
KFTAALAAAI SGRFIEQSRT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-201361921974Probable WRKY transcription factor 4
2lex_A4e-201361921974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00068PBMTransfer from AT2G25000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023876m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2279871e-171AK227987.1 Arabidopsis thaliana mRNA for putative WRKY-type DNA binding protein, complete cds, clone: RAFL14-52-F05.
GenBankBT0046111e-171BT004611.1 Arabidopsis thaliana At2g25000 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294825.10.0probable WRKY transcription factor 60 isoform X1
SwissprotQ9SK331e-151WRK60_ARATH; Probable WRKY transcription factor 60
TrEMBLR0HUF20.0R0HUF2_9BRAS; Uncharacterized protein
STRINGXP_006294825.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.11e-153WRKY DNA-binding protein 60
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  4. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  5. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  6. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]