PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10023994m

Common Name

CARUB_v10023994mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

BBR-BPC

Protein Properties

Length: 230aa MW: 25146.7 Da PI: 10.4981

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10023994m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	268.3	4e-82	30	229	96	301
GAGA_bind 96 pvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189 +++ ++++t+ +d +q +q ++ + ++ l+++ +++ ++ ++ +++k+++q+ +k++++k+ +kk+ ++s k++k++s +++k+ Carubv10023994m 30 FHSYIAVPNTTGVDLSQV---SQASPVESMMVPQSRLSHPITVDYRNGVESVEQKSTNQSLSKALKPKTPRKKR--ATSDKSKKTPSI-PETKR 117 345788999999998888...44444444455677777777777888888888888888888888887777777..556667778886.699 PP GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283 ekk++d++++ s+D+s +P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL +La+eGy+ls+pv Carubv10023994m 118 EKKNLDINIDISSFDTSEVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLVRLAGEGYNLSHPV 211 ****************************************************************************************** PP GAGA_bind 284 DLkdhWAkHGtnkfvtir 301 DLk+hWA+HGtnkfvti+ Carubv10023994m 212 DLKNHWARHGTNKFVTIK 229 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.4E-100	1	229	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.3E-70	70	229	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MNSFPSQNLM LSASKANKDA GLRTSNANWF HSYIAVPNTT GVDLSQVSQA SPVESMMVPQ 60 SRLSHPITVD YRNGVESVEQ KSTNQSLSKA LKPKTPRKKR ATSDKSKKTP SIPETKREKK 120 NLDINIDISS FDTSEVPPPV CSCTGVSRVC YKWGMGGWQS SCCTISISTY PLPMSTTRPG 180 ARLAGRKMSN GAYVKLLVRL AGEGYNLSHP VDLKNHWARH GTNKFVTIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10023994m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU089961	0.0	EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294940.1	1e-171	protein BASIC PENTACYSTEINE7
Swissprot	O82286	1e-136	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	R0HUS9	1e-169	R0HUS9_9BRAS; Uncharacterized protein
STRING	XP_006294940.1	1e-170	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13674	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	1e-138	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	Carubv10023994m
Entrez Gene	17889599