PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024004m
Common NameCARUB_v10024004mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 227aa    MW: 26597.6 Da    PI: 7.6711
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024004mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.33.6e-10110201387
                      EE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
               B3   3 kvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 
                      k+l+ sdv  + +rl+lp++f++e        ++++  ++ + ++ ++ ++  + ++ +k+    +lt+GWkeFv    L  + Dfv+  + ++
  Carubv10024004m 110 KQLKLSDVDGNqSRLMLPRQFVAESivpfleaSENPSVGINVLVYRPDRKVQHMIFKLWKRA--PFLTSGWKEFVTKYSLMkTSDFVTVWVFRH 201
                      67777888766699*******98889****99667778889999998886655555448886..89*************97699*998654444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-13108208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-13108212IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-11108211No hitNo description
SMARTSM010191.0E-5108211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVFKQKEKDA EVVIAARILM HISQAQAPEE DDTDDEVEFE DESTPLLQVS QRADTNQPKK  60
VENQNMMRID KKERFSEEKQ RLIQTWYRAE PEPPEIFDEV PRPFNKPLKK QLKLSDVDGN  120
QSRLMLPRQF VAESIVPFLE ASENPSVGIN VLVYRPDRKV QHMIFKLWKR APFLTSGWKE  180
FVTKYSLMKT SDFVTVWVFR HLKTRKLCFA IDHIRFPLME NQVGSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024004m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505731.13e-72PREDICTED: putative B3 domain-containing protein At4g03170
SwissprotQ9ZR143e-62Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLR0FYK21e-165R0FYK2_9BRAS; Uncharacterized protein
STRINGXP_006294948.11e-166(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-64B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]