PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024111m
Common NameCARUB_v10024111mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 195aa    MW: 21704.2 Da    PI: 6.5216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024111mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-184695255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Carubv10024111m 46 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 95
                     59****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-3246104IPR001471AP2/ERF domain
PROSITE profilePS5103222.57646103IPR001471AP2/ERF domain
SMARTSM003801.1E-3946109IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2146104IPR016177DNA-binding domain
PfamPF008472.1E-114795IPR001471AP2/ERF domain
PRINTSPR003671.9E-104758IPR001471AP2/ERF domain
CDDcd000187.78E-3447105No hitNo description
PRINTSPR003671.9E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MERDSCRRFQ DSPAQATERR RVKNHPKKKR AKEDDDNEKV VSKHPTFRGV RMRQWGKWVS  60
EIREPKKKSR IWLGTFSTAE MAARAHDVAA LAIKGGSAHL NFPELAYHLP RPASADPKDI  120
QAAAAAAAAI NDMEVETSPS PSPTVTDTSS PTMTAISDDA FSDLPDLLLD VNHKIDGFWE  180
SFPDEEEPFL SQSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1734103272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024111m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295043.11e-142ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP31e-101ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLR0FYV11e-140R0FYV1_9BRAS; Uncharacterized protein
STRINGXP_006295043.11e-141(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-90ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]