PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024245m
Common NameCARUB_v10024245mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 154aa    MW: 16995.2 Da    PI: 8.1932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024245mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.0001438781055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + R d++ ++++ L++l+ +      +K + a++L + ++YI+ Lq
  Carubv10024245m 38 KERKDKLGERISALQQLVSPY-----GKTDTASVLLEGMQYIQFLQ 78
                     67899999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.8E-92888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0142877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-113691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-53882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEYSRDSAGV MMANKRNVCS LEENSIKRHK SDLSFSSKER KDKLGERISA LQQLVSPYGK  60
TDTASVLLEG MQYIQFLQEQ VKVLSAPYLQ ATPTSTQEEL EEYSLRSRGL CLVPLEYTSG  120
VAQTNGADIW APVKKAPTSP HAFSLSSSNS PFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024245m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760411e-163AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640042.11e-111transcription factor bHLH154
SwissprotQ7XJU12e-93BH154_ARATH; Transcription factor bHLH154
TrEMBLR0HEN71e-109R0HEN7_9BRAS; Uncharacterized protein
STRINGXP_006295166.11e-110(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.16e-96bHLH family protein