PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024493m
Common NameCARUB_v10024493mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29355.3 Da    PI: 6.0701
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024493mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-081251342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+n+s r +t+ +R +g+  K +E+ +LC+++++ +i+ +
  Carubv10024493m 12 ISNDSIRRTTLRRRGEGLKNKLKEIKTLCGVDACAVIYDP 51
                     9*********************************999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.241249IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-6261IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-14379IPR002100Transcription factor, MADS-box
CDDcd002663.63E-19382No hitNo description
PfamPF003192.8E-91252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGKRSKLKLA YISNDSIRRT TLRRRGEGLK NKLKEIKTLC GVDACAVIYD PEKPTPDVWP  60
SEPEVSDVIK RVDTETATKR TMMNQKEFLN QCIEKAKKQE RRMVEDNKEI RLKEAMFKCL  120
EGGKMGDPDM NNKDRRELCE FVDKYLKNIY HHRDVTLKNP DFEIGESSSR DMLPSYVSPV  180
MAPPPPMAQT NQGAADVDLQ ISNNQEVYIP AVNQDEFHYP DQNHDGTQDQ GFIEQMMKYG  240
EETNFPWMDH KQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024493m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295398.10.0agamous-like MADS-box protein AGL80
TrEMBLR0FZN50.0R0FZN5_9BRAS; Uncharacterized protein
STRINGXP_006295398.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.18e-54AGAMOUS-like 46