PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024599m
Common NameCARUB_v10024599mg, TFhs1
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 143aa    MW: 17022.7 Da    PI: 10.6902
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024599mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.93.4e-19101073101
                      HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHS..TT......--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
     HSF_DNA-bind   3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyF..kh......snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                      l k+y++++d++++++iswse+g+sf+v++++e++++v+p++F  +       +nf+ F + Ln YgF++v++ee         +eF+++ F +
  Carubv10024599m  10 LGKTYDMVDDPSTDSTISWSESGKSFIVWNPKELSRDVIPRFFgfRRdeteypRNFSLFAKLLNRYGFRRVDSEE---------IEFADHDFVR 94 
                      679**************************************98442222233369*****************999.........89******** PP

                      XXXXXXXXXXXXX CS
     HSF_DNA-bind  89 gkkellekikrkk 101
                      g+ +l+++i ++k
  Carubv10024599m  95 GEPDLVRHICKRK 107
                      ********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-295106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-2410105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-1811105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-2111105IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDSVLRSTIL GKTYDMVDDP STDSTISWSE SGKSFIVWNP KELSRDVIPR FFGFRRDETE  60
YPRNFSLFAK LLNRYGFRRV DSEEIEFADH DFVRGEPDLV RHICKRKIVR KRDTKAGKDR  120
LRKIMVMRKP KRKNMKKHYV LF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024599m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1626110.0EU162611.1 Capsella rubella clone contig46 BAC sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295495.11e-100heat stress transcription factor A-4a
TrEMBLB2BXU49e-99B2BXU4_9BRAS; TFhs1
STRINGXP_006295495.12e-99(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.15e-29heat shock factor 1